Modeling the structure of supramolecular complexes boric acid –pectin

Authors

  • S.V. Prymachenko National aviation university , Національний авіаційний університет
  • А.D. Kustovskaya National aviation university , Національний авіаційний університет
  • V.L. Chumak National aviation university , Національний авіаційний університет
  • V.I. Maxin National University of Life and Environmental Sciences of Ukraine image/svg+xml

DOI:

https://doi.org/10.31548/dopovidi2019.03.001

Keywords:

complex compounds, supramolecular complexes, boric acid, pectin

Abstract

In order to study the possibility of creating products of interaction of boric acid with pectin, a number of compounds with 1: 1 pectin boric acid and 2:1 ratio were synthesized. A theoretical calculation of the possibility of complex formation using HyperChem 8.07 software by the method of molecular mechanics (force field AMBER) and semiempirical methods PM3 using the Polak-Ribier algorithm was carried out. Quantum-chemical calculation of model structures showed a high probability of forming pectin-boric acid complexes in a ratio of 2:1. The scheme of 2:1 complex formation was proposed, where a single pectin molecule forms with boric acid etheric connections through the side chains of sugars, while the second molecule of pectin forms an ester bond through the carboxyl group of the galacturonic chain.

The probability of such complex formation was confirmed by method of IR spectroscopy. Samples of pure pectin and the product of its interaction with boric acid were studied. An intensive band was detected in the region of 1500-1600 cm-1 in the spectrum of pure pectin. This indicates the presence of free carboxyl groups of galacturonic acid in pectin.The relative intensity of this band decreases on the spectrum of the product of the interaction of pectin with boric acid. At the same time, lines of medium intensity appear in the region 1750-1755 cm-1, which indicates the probable presence of a small number of ester groups that connect pectin with boric acid.

Author Biographies

  • S.V. Prymachenko, National aviation university, Національний авіаційний університет
    асистент кафедри хімії і хімічної технології, ФЕБІТ, НАУ
  • А.D. Kustovskaya, National aviation university, Національний авіаційний університет
    к.х.н., доцент кафедри хімії і хімічної технології, ФЕБІТ, НАУ
  • V.L. Chumak, National aviation university, Національний авіаційний університет
    зав. каф., д.х.н., професор кафедри хімії і хімічної технології, ФЕБІТ, НАУ
  • V.I. Maxin, National University of Life and Environmental Sciences of Ukraine
    д.х.н., професор кафедри аналітичної і біонеорганічної хімії та якості води, агробіологічного факультету, НУБіП

References

Gospodarenko G. M. (2018). The system of dobriv. Kyiv: CJSC «SIK GROUP Ukraine»,. p. 126-137.

Chen, M., Mishra, S., Heckathorn, S., Frantz, J., & Krause, C. (2014). Proteomic analysis of Arabidopsis thaliana leaves in response to acute boron deficiency and toxicity reveals effects on photosynthesis, carbohydrate metabolism, and protein synthesis. Journal Of Plant Physiology, 171(3-4), 235-242.

https://doi.org/10.1016/j.jplph.2013.07.008

Katalymov, M. Century. Trace elements and micronutrient fertilizers. Ripol Classic, 2013.

Blevins, D., & Lukaszewski, K. (2002). BORON IN PLANT STRUCTURE AND FUNCTION. Annual Review Of Plant Physiology And Plant Molecular Biology, 49(1), 481-500.

https://doi.org/10.1146/annurev.arplant.49.1.481

Hänsch, R., & Mendel, R. (2009). Physiological functions of mineral micronutrients (Cu, Zn, Mn, Fe, Ni, Mo, B, Cl). Current Opinion In Plant Biology, 12(3), 259-266.

https://doi.org/10.1016/j.pbi.2009.05.006

Caffall, K., & Mohnen, D. (2009). The structure, function, and biosynthesis of plant cell wall pectic polysaccharides. Carbohydrate Research, 344(14), 1879-1900.

https://doi.org/10.1016/j.carres.2009.05.021

Chormova, D., Messenger, D., & Fry, S. (2014). Boron bridging of rhamnogalacturonan-II, monitored by gel electrophoresis, occurs during polysaccharide synthesis and secretion but not post-secretion. The Plant Journal, 77(4), 534-546.

https://doi.org/10.1111/tpj.12403

Matoh, T., Kawaguchi, S., & Kobayashi, M. (1996). Ubiquity of a Borate-Rhamnogalacturonan II Complex in the Cell Walls of Higher Plants. Plant And Cell Physiology, 37(5), 636-640.

https://doi.org/10.1093/oxfordjournals.pcp.a028992

O'Neill, M., Ishii, T., Albersheim, P., & Darvill, A. (2004). RHAMNOGALACTURONAN II: Structure and Function of a Borate Cross-Linked Cell Wall Pectic Polysaccharide. Annual Review Of Plant Biology, 55(1), 109-139.

https://doi.org/10.1146/annurev.arplant.55.031903.141750

Brown, P. H., et al. «Boron in plant biology.» Plant biology 4.02 (2002): 205-223.

https://doi.org/10.1055/s-2002-25740

Ovodova, Raisa G., et al. "The latest information about pectin polysaccharides." News of the Komi Scientific Center UB RAS 3 (3) (2010).

Ovodov, Yu. S. "Modern concepts of pectin." Bioorganic chemistry 35.3 (2009): 293-310.

https://doi.org/10.1134/S1068162009030017

Kobayashi, M., Matoh, T., & Azuma, J. (1996). Two Chains of Rhamnogalacturonan II Are Cross-Linked by Borate-Diol Ester Bonds in Higher Plant Cell Walls. Plant Physiology, 110(3), 1017-1020. https://doi.org/10.1104/pp.110.3.1017

Prymachenko, S., Kustovskaya, А., & Mokhnev, D. (2018). Biological activity and bioavailability of supramolecular complexes (pectin-boric acid) in vivo of land plants (emryophytes). Problems Of Environmental Biotechnology, 0(2). https://doi.org/10.18372/2306-6407.2.13222

O'Neill, Malcolm A., et al. "Rhamnogalacturonan-II, a pectic polysaccharide in the walls of growing plant cell, forms a dimer that is covalently cross-linked by a borate ester in vitro conditions for the formation and hydrolysis of the dimer." Journal of Biological chemistry 271.37 (1996): 22923-22930.

https://doi.org/10.1074/jbc.271.37.22923

Interaction of polyols with boric acid and sodium monoborate. Schwartz, E.M., Ignash R.T., Belousova R.G. Journal of General Chemistry. 2005. T. 75. No. 11. P. 1768-1774.

https://doi.org/10.1007/s11176-005-0492-7

Schwartz E.M. Complex boron compounds with polyoxy compounds. Riga. 1968. 244 p.

Olsen, J., Rouzé, P., Verhelst, B., Lin, Y., Bayer, T., & Collen, J. et al. (2016). The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea. Nature, 530(7590), 331-335.

https://doi.org/10.1038/nature16548

Ovodov, Yu. S. "Polysaccharides of flowering plants: structure and physiological activity." Bioorganic Chemistry 24.7 (1998): 483-501.

Donchenko L.V., Karpovich N.S., Simkhovich E.G. Pectin production. - Chisinau, 1993. - p. 135 - 164.

Tarasevich, B.N. "IR spectra of the main classes of organic compounds." M.: Reference materials (2012).

Dembitsky, V., Smoum, R., Al-Quntar, A., Ali, H., Pergament, I., & Srebnik, M. (2002). Natural occurrence of boron-containing compounds in plants, algae and microorganisms. Plant Science, 163(5), 931-942.

https://doi.org/10.1016/S0168-9452(02)00174-7

Khatko, Zuret Nurbievna. "Infrared spectra of beet pectin." New Technologies 5 (2008).

Published

2019-06-27

Issue

Section

Biology, biotechnology, ecology